Master Pipeline Development for Sequencing Reads Assembly

سرفصل های دوره

Master Genome Assembly Techniques: From Short and Long Read Sequencing to Linux Essentials for Bioinformatics

1. Introduction

1. Introduction To Genome Assembly

2. Genome Assembly Algorithms and Tools

3. Short Read Sequencing

4. Long Read Sequencing

5. Choosing Right Sequencing Technology

6. Introduction to Sequencing Reads Assembly.html

2. Linux Essentials for Bioinformatics

1. Getting Started with Linux for Bioinformatics

2. Hands-On Experience with Basic Linux Commands

3. Bioinformatics Tools Installation

4. E-utilities on Linux

5. Blast Usage on Linux

6. Using Linux on Windows WSL

Files.zip

3. Short Read Sequencing Pipeline

1. Downloading Short Read Data

2. Installing Tools for Short Read Assembly

3. Quality Check of Short Reads

4. Trimming The Reads

5. Assembling Short Reads into Contigs and Scaffolds

6. Installing And Running Ubuntu Gui Apps in WSL

7. Post Assembly Analysis (Vis the Assembly)

8. Short Read Sequencing Pipeline Quiz.html

Files.zip

4. Long Read Sequencing Pipeline

1. Retrieving Long Reads Data

2. Anaconda Setup for Tools

3. Installing The Tools Using Conda

4. Quality Assessment of Long Reads

5. Trimming The Reads

6. Assembling Reads and Post Assembly Analysis

7. Long Read Sequencing Pipeline Quiz.html

Files.zip

5. Comprehensive Sequencing Reads Assembly Project

1. The Final Project.html

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تولید کننده: Udemy