Bioinformatics for Everyone Beginner to Expert Guide 2023

سرفصل های دوره

Bioinformatics Beginners to advance course to learn in 10 hours to understand the simple and complex topics of bioinfo

1 - Introduction of Bioinformatics

1 - Introduction

2 - Introduction of Bioinformatics field

3 - History of bioinformatics

4 - Components of bioinformatics

5 - Working in Bioinformatics

6 - Career Outlook for bioinformaticians

7 - Careers for bioinformaticians

8 - Applications of Bioinformatics

9 - Applications of Bioinformatics Pt2

2 - Biological Databases

10 - Introduction of Biological Databases

11 - Types of Biological Databases

12 - Difference Between Primary and Secondary Databases

13 - Primary Databases

14 - Explaining Primary Databases

15 - Explaining Primary Databases pt2

16 - Explaining Primary Databases Last Part

17 - Introduction of Secondary Databases

18 - Explaining Secondary Databases

19 - Explaining Secondary Databases pt2

20 - Explaining Secondary Databases Pt3

21 - Explaining Secondary Databases Pt4

22 - Introduction of Literature Databases

23 - Explaining Literature Databases

3 - File Formats in Bioinformatics

24 - Introduction of File Formats

25 - Explaining different File Formats

26 - Summary of File Formats

4 - Segment 3 Sequence Alignment and Tools

27 - Introduction of Sequence Alignment

28 - History of Sequence Alignment

29 - Alignment Methods

30 - Interpretation of Sequence Alignment

31 - Representation and Storing of Sequences

32 - Significance and Uses of Sequence Alignment

33 - Software Used for Sequence Alignment

34 - Pairwise Sequence Alignment

35 - Tools for Pairwise Sequence Alignment

36 - Multiple Sequence Alignment

37 - Tools for Multiple Sequence Alignment

38 - Clustal tool for alignment

5 - Command line bioinformatics

39 - Introduction and Why CLI in Bioinformatics

40 - CLI and GUI Explanation

41 - if we already have Graphical user interface system why we should use CLI

42 - Short Practical with Programming Language

43 - Why Would You Use CLI over GUI

44 - Foundation behind CLI Shell explanation

45 - Drawbacks of CLI and GUI

46 - Linux Introduction and Usage Over years

47 - Linux Distros

48 - Why Ubuntu Operating System

49 - WSL Explanation

50 - Linux Vs Unix

51 - Practical Making A Subsystem For Linux In Windows OS

52 - Linux File Handling Commands

53 - Accessing And Creating Files In Windows Os

54 - Basic Process Management Commands for Linux OS

55 - Eutilities on the Linux Command Line

56 - Installing NCBI through CLi

57 - Entrez Direct Functions

58 - Mrna And Protein Seq Retrieval

59 - Batch Retrieval of Protein Using Taxon Id

60 - Retrieving CDS From Reference Genome

61 - Explaining Different Commands

6 - Bioinformatics and Genomics on GUI

62 - Introduction of Course Section

63 - Nextgeneration sequencing

64 - Generations of Sequencing

65 - NGS Workflow

66 - SRA Database introduction

67 - SRA File

68 - Galaxy Server Intro to Goals

69 - Galaxy Server And Objects

70 - Getting Onto Galaxy

71 - Tools For NGS Data Analysis

72 - Getting SRA Runs from Databases And platform

73 - Ncbi Genome to Galaxy

74 - Getting Sra Runs To Galaxy

75 - Fastqc Tool To Dataset Generated Dataset

76 - Trimmomatic Tool On Dataset

77 - Alignmentgenome Mapping

78 - Abundance Estimation Tool On Dataset

79 - From Values To Visuals Heatmap

7 - Bioinformatics and Genomics on CLI

80 - NGS Understanding

81 - Getting the SRA Reads

82 - Bioinformatics Pipeline

83 - Checking the Quality of Data

84 - Quality Trimming of data

85 - Aligners and Aligning Reads to genome

86 - SAM and Bam File Indexing and Sorting

87 - Feature Extraction

88 - Pipeline Code.html

8 - Variant Calling on Command line

89 - Introduction of Course Section

90 - Variants and Types

91 - Understanding the Metadata and Softwares

92 - Getting Data From SRA Using SRA Toolkit

93 - Quality Control and Trimming

94 - Sam and Bcf Tools and Fixing NS and Calling Variants

95 - Alignment to Reference Genome

96 - Separation of SNPs and Indels Variants

97 - Visualizing Variants Using IGV and UCSC Browser

98 - Pipeline Code.html

9 - Bioinformatics And Proteomics

99 - Section Introduction

100 - Explaining Homology Modeling

101 - GUI based Modeling of Proteins

102 - Command Line based Protein Modeling

103 - DeNovo and Machine Learning Methods

104 - Phylogenetics Analysis

105 - Motifs and Domains analysis

106 - Protein Physical Parameters and Location Analysis

107 - ProteinProtein Interaction and Enrichment Analysis

108 - Proteins Pathway Analysis

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تولید کننده: Udemy-Training