Python Programming for Biological Problems

سرفصل های دوره

Solve more than 30 exercises and 4 Biology projects using Python programming language! Step by step implementations!

1. Introduction

1. Course content - Jones

2.1 python_for_biology_intro.PDF

2. Course content - Guilherme

3. Introduction to Python

4. Installation

5. Python IDEs

2. Variables, data types, and inputs

1. Variables and constants

2. Mathematical operations

3. Exercises

4. Exercise 1 Ki calculation

5. Exercise 2 Recombination of genotypes

3. Logical and relational operators

1. Logical and relational operators

2. Exercise

3. Exercise 1 Comparing weights of proteins

4. Strings

1. Strings

2. Exercises

3. Sequences to be used in exercise 2.html

4. Solution abbreviating scientific names

5. Solution Extracting an exon from a gene

5. Conditional operators

1. Conditional operators

2. Exercises

3. Solution Taxonomic families

4. Solution Codons in a RNA sequence

6. Loops

1. For loop

2. While loop

3. Exercises

4. Solution transcription of DNA

5. Solution Bacterial growth

7. Collections

1. Tuples and lists

2. Dictionaries and sets

3. Matrices

4. Exercises

5. Dicitionary with the symbols of their aas and the mass.html

6. Solution mass of aminoacid sequeces

7. Solution transcription of DNA

8. Project 1 Simulating a biology test

9. Questions for the test.html

10. Solution part 1

11. Solution part 2

12. Solution part 3

8. Functions

1. Functions

2. Exercises

3. Solution function of recombination

4. Solution Ki calculation

5. Solution transcription function

6. Project 2 calculating gene frequencies

7.1 CHI SQUARE TABLE.pdf

7. Chi-square distribution table.html

8. Project 2 part 1

9. Project 2 part 2

9. Modules

1. Math and datetime

2. Random and time

3. Exercises

4. Solution generation of random DNA sequence

5. Solution function of population growth

10. Custom modules

1. Creating packages

2. Exercises

3. Solution DNA module

4. Solution module for ecology functions

11. Errors and exceptions

1. Errors and exceptions

2. Exercise

3. Solution validation of numerical inputs

4. Project 3 - Identification key

5.1 Identification key.pdf

5. Image of the key.html

6. Solution part 1

7. Solution part 2

12. Text files

1. Reading and writing text files

2. Genetic databases

3. Protein database PDB

4. Exercises

5. Solution reading a DNA sequence

6. Solution reading a .pdb sequence

7. Project 4 - Reading and processing gene sequences

8. Solution part 1

9. Solution part 2

10. Solution part 3

13. Regular expressions

1. Introduction

2. Search, match and find all

3. Regular expressions - main metacharacters and quantifiers.html

4. Exercise

5. Solution Identifying species names in a text

6. Sample sequence for exercise 2.html

7. Solution Analyzing a genetic sequence

14. Object oriented

1. Introduction

2. Practical

3. Exercise

4. Solution Class Plant

5. Solution Class DNA

15. Final remarks

1. Final remarks

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تولید کننده: Udemy-Training